Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 51018

Identification

Species:
Selaginella moellendorffii
Gene model
51018
Description
gw1.22.321.1
Family
PHD
3D structure (top 5)
1W5S 2QBY 1FNN 2V1U 1SXJ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

490065 Score: 1

Arabidopsis thaliana

AT4G14700.1 Score: 1

Chlorella sp. NC64A

139139 Score: 1

Carica papaya

evm.TU.supercontig_84.64 Score: 1

Chlamydomonas reinhardtii

143060 Score: 1

Micromonas pusilla CCMP1545

36249 Score: 1

Micromonas sp. RCC299

88660 Score: 1

Ostreococcus lucimarinus

15230 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g08790.1 Score: 1

Ostreococcus tauri

17014 Score: 1

Physcomitrella patens

131736 Score: 1

Populus trichocarpa

203051 Score: 1

Sorghum bicolor

4769950 Score: 1

Vitis vinifera

GSVIVP00024619001 Score: 1

Zea mays

GRMZM2G168249_P01 Score: 1
GRMZM2G151875_P01 Score: 0.922

Expression data

Expressed Sequence Tags

At.25357
Arabidopsis thaliana origin recognition complex 1 mRNA, complete cds /cds=p(6,2435) /gb=AF277982
At.48852
Arabidopsis thaliana ATORC1B/ORC1B/UNE13 (ORIGIN OF REPLICATION COMPLEX 1B); DNA binding / protein binding (ATORC1B/ORC1B/UNE13) mRNA, complete cds /cds=p(1,2442) /gb=NM_117332
Os.273
Oryza sativa Japonica Group OsORC1 mRNA for origin recognition complex 1, complete cds /cds=p(102,2540) /gb=AB037135
Vvi.11572
WIN025.TB24.1_L13 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_L13 3', mRNA sequence /clone=WIN025_L13 /clone_end=3' /gb=EC924528

Domain Architecture

PHD PF00628 51018
DomainStartEndBit scoreE-value
PHD6511255.61.9e-13
BAH9723283.67.1e-22
AAA34855739.48.2e-09

Sequences

protein sequence
transcript sequence