Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 53068

Identification

Species:
Physcomitrella patens
Gene model
53068
Description
gw1.83.253.1
Family
CCAAT
3D structure (top 5)
2BYK 1JFI 1N1J 2HUE 1KU5
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21494
Arabidopsis thaliana CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) (AT5G47640) mRNA, complete cds /cds=p(188,760) /gb=NM_124138
At.28391
Arabidopsis thaliana CCAAT-box binding transcription factor, putative (AT2G37060) mRNA, complete cds /cds=p(162,683) /gb=NM_001036423
At.33269
03-L022243-065-008-C01-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 008-C01, mRNA sequence /clone=008-C01 /gb=DR751487
Hv.26941
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86i15, mRNA sequence /gb=AK250539
Mtr.10804
EST669970 MTUS Medicago truncatula cDNA clone MTUS-18B7, mRNA sequence /clone=MTUS-18B7 /gb=CF069249
Mtr.14376
Medicago truncatula clone MTYF1_F2_F3_F41G-K-6 unknown mRNA /cds=m(403,933) /gb=BT051316
Mtr.466
EST1225664 MTY Medicago truncatula cDNA clone MTYAK54, mRNA sequence /clone=MTYAK54 /gb=DW016703
Os.27839
Oryza sativa Japonica Group cDNA clone:J023121O11, full insert sequence /cds=p(253,810) /gb=AK100811
Os.49770
Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3a) mRNA, complete cds /cds=p(1054,1713) /gb=AY062181
Os.49795
Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence /cds=p(76,750) /gb=AK112118
Pba.1463
WS0252.B21_A22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_A22 3', mRNA sequence /clone=WS0252_A22 /clone_end=3' /gb=CV243504
Pba.737
WS02518.B21_K05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_K05 3', mRNA sequence /clone=WS02518_K05 /clone_end=3' /gb=CV243355
Ppa.17867
DC957411 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs24e16 3', mRNA sequence /clone=ppgs24e16 /clone_end=3' /gb=DC957411
Ppa.7249
BY947709 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS023F15 5', mRNA sequence /clone=PPLS023F15 /clone_end=5' /gb=BY947709
Pth.12515
UM63TC12.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM63TC12 3', mRNA sequence /clone=UM63TC12 /clone_end=3' /gb=DN491129
Pth.13511
WS0163.B21_E08 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_E08 3', mRNA sequence /clone=WS0163_E08 /clone_end=3' /gb=CV226095
Pth.1463
WS0252.B21_A22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_A22 3', mRNA sequence /clone=WS0252_A22 /clone_end=3' /gb=CV243504
Pth.2579
WS0161.B21_D19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_D19 3', mRNA sequence /clone=WS0161_D19 /clone_end=3' /gb=CV225383
Vvi.10309
C1G05586 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G05586, mRNA sequence /clone=C1G05586 /gb=EE062969
Vvi.17625
WIN0544.C21_K11 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0544_K11 3', mRNA sequence /clone=WIN0544_K11 /clone_end=3' /gb=EC948432

Domain Architecture

CBFD_NFYB_HMF PF00808 53068
DomainStartEndBit scoreE-value
CBFD_NFYB_HMF671131.91.9e-36
NF-YB895224.73.4e-67

Sequences