Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 548499

Identification

Species:
Populus trichocarpa
Gene model
548499
Description
eugene3.00010940
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

911518 Score: 1

Arabidopsis thaliana

AT4G11660.1 Score: 1

Carica papaya

evm.TU.supercontig_74.65 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g43334.1 Score: 1

Sorghum bicolor

5000270 Score: 1

Vitis vinifera

GSVIVP00001119001 Score: 1

Zea mays

GRMZM2G164909_P01 Score: 1

Expression data

Expressed Sequence Tags

At.24995
Arabidopsis thaliana AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor (AT-HSFB2B) mRNA, complete cds /cds=p(377,1510) /gb=NM_117235
At.5365
Arabidopsis thaliana HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor (HSF4) mRNA, complete cds /cds=p(484,1338) /gb=NM_119862
Mtr.10591
EST1225248 MTY Medicago truncatula cDNA clone MTYAF37, mRNA sequence /clone=MTYAF37 /gb=DW016287
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.11941
Oryza sativa Japonica Group cDNA clone:002-108-F03, full insert sequence /gb=AK106545
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Os.50642
Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds /cds=p(122,988) /gb=AY344483
Ppa.16751
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_206139) mRNA, partial cds /cds=p(377,1177) /gb=XM_001758240

Domain Architecture

HSF_DNA-bind PF00447 548499
DomainStartEndBit scoreE-value
HSF_DNA-bind38257146.48.1e-41

Sequences