Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 551322

Identification

Species:
Populus trichocarpa
Gene model
551322
Description
eugene3.00020637
Family
Trihelix
3D structure (top 5)
2EBI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

895569 Score: 1

Arabidopsis thaliana

AT1G76880.1 Score: 1

Carica papaya

evm.TU.supercontig_21.191 Score: 1

Sorghum bicolor

4784895 Score: 1

Vitis vinifera

GSVIVP00031772001 Score: 1

Expression data

Expressed Sequence Tags

At.43159
Arabidopsis thaliana clone 4157 mRNA sequence /gb=DQ108861
At.70105
Arabidopsis thaliana trihelix DNA-binding protein, putative (AT1G76880) mRNA, complete cds /cds=p(95,1906) /gb=NM_106339
At.73050
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-35-A17 /cds=p(677,922) /gb=AK227778
Hv.29321
AL509143 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY10N10V 5', mRNA sequence /clone=HY10N10 /clone_end=5' /gb=AL509143
Os.13466
Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence /gb=AK111742
Ptp.3220
X011B09 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU894555
Vvi.12112
SBB04850 Inflorescence (VvS11) Vitis vinifera cDNA clone SBB04850, mRNA sequence /clone=SBB04850 /gb=EE104062
Vvi.16933
S6B06525 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B06525, mRNA sequence /clone=S6B06525 /gb=EE090239

Domain Architecture

trihelix trihelix 551322
DomainStartEndBit scoreE-value
trihelix430493122.61.8e-36

Sequences