Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 556614

Identification

Species:
Populus trichocarpa
Gene model
556614
Description
eugene3.00041327
Family
CSD
3D structure (top 5)
1H95 1C9O 1G6P 3CAM 2KCM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480954 Score: 1

Carica papaya

evm.TU.supercontig_37.164 Score: 1

Physcomitrella patens

180264 Score: 1
183211 Score: 1

Populus trichocarpa

556614 Score: 1
754616 Score: 1

Selaginella moellendorffii

186937 Score: 1

Vitis vinifera

GSVIVP00036773001 Score: 1

Populus trichocarpa

556614 Score: 1
754616 Score: 1

Zea mays

GRMZM2G090076_P01 Score: 1
GRMZM2G179385_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1680
45-L021843-065-003-A03S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 003-A03, mRNA sequence /clone=003-A03 /gb=DR750668
At.19464
Arabidopsis thaliana cold-shock DNA-binding family protein (AT2G17870) mRNA, complete cds /cds=p(50,955) /gb=NM_127341
At.24348
glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] /cds=p(56,667) /gb=S47408
At.73207
Arabidopsis thaliana CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding (CSDP2/GRP2) mRNA, complete cds /cds=p(332,943) /gb=NM_120029
Hv.22816
HVSMEn0005B12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0005B12f, mRNA sequence /clone=HVSMEn0005B12f /gb=BI956744
Os.4724
Oryza sativa Japonica Group cDNA clone:J023061H10, full insert sequence /gb=AK070711
Os.54054
Oryza sativa Japonica Group cDNA, clone: J100044F18, full insert sequence /gb=AK243227
Ppa.598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_183211) mRNA, complete cds /cds=p(1,597) /gb=XM_001763837

Domain Architecture

CSD PF00313 556614
DomainStartEndBit scoreE-value
CSD471128.42.1e-35
zf-CCHC14516237.45e-08
zf-CCHC18720437.25.8e-08

Sequences