Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 557115

Identification

Species:
Populus trichocarpa
Gene model
557115
Description
eugene3.00090375
Family
C3H
3D structure (top 5)
1M9O 2E5S 3D2Q 3D2N 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479452 Score: 1

Arabidopsis thaliana

AT3G19360.1 Score: 1

Carica papaya

evm.TU.supercontig_75.53 Score: 1

Vitis vinifera

GSVIVP00016857001 Score: 1

Expression data

Expressed Sequence Tags

Pba.1354
WS0253.B21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_H24 3', mRNA sequence /clone=WS0253_H24 /clone_end=3' /gb=CV244018
Pth.1354
WS0253.B21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_H24 3', mRNA sequence /clone=WS0253_H24 /clone_end=3' /gb=CV244018
Vvi.22905
WIN106.C21_B12 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA clone WIN106_B12 3', mRNA sequence /clone=WIN106_B12 /clone_end=3' /gb=EC977900

Domain Architecture

zf-CCCH PF00642 557115
DomainStartEndBit scoreE-value
zf-CCCH8010537.54.8e-08
zf-CCCH14316930.94.7e-06
zf-CCCH22925548.72.1e-11

Sequences