Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 557852

Identification

Species:
Populus trichocarpa
Gene model
557852
Description
eugene3.00091112
Family
C3H
3D structure (top 5)
1YCS 2BKG 1BD8 3C5R 1SW6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Pba.2984
WS01121.BR_A14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_A14 5', mRNA sequence /clone=WS01121_A14 /clone_end=5' /gb=DT495629
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477

Domain Architecture

Ank PF00023 557852
DomainStartEndBit scoreE-value
Ank649723.60.00071
Ank9913433.57.6e-07
zf-CCCH28030520.50.0027
zf-CCCH3153372.50.64

Sequences