Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 557948

Identification

Species:
Populus trichocarpa
Gene model
557948
Description
eugene3.00091208
Family
C2H2
3D structure (top 5)
2PQF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481881 Score: 1

Arabidopsis thaliana

AT2G29660.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g15790.1 Score: 1

Vitis vinifera

GSVIVP00024145001 Score: 1

Populus trichocarpa

557948 Score: 1
641083 Score: 1

Zea mays

GRMZM2G093305_P01 Score: 1
GRMZM2G093305_P02 Score: 1

Expression data

Expressed Sequence Tags

At.43819
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT2G29660) mRNA, complete cds /cds=p(457,1578) /gb=NM_128520
Mtr.7870
EST5312975 GESD Medicago truncatula cDNA clone pGESD10C24 5' end, mRNA sequence /clone=pGESD10C24 /clone_end=5' /gb=BI311225
Pba.474
WS02529.B21_D12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_D12 3', mRNA sequence /clone=WS02529_D12 /clone_end=3' /gb=DT485806
Pth.13628
WS0259.B21_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0259_M06 3', mRNA sequence /clone=WS0259_M06 /clone_end=3' /gb=CV245926
Pth.474
WS02529.B21_D12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_D12 3', mRNA sequence /clone=WS02529_D12 /clone_end=3' /gb=DT485806
Vvi.15746
VV_PEd0010c03.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV239980

Domain Architecture

zf-C2H2 PF00096 557948
DomainStartEndBit scoreE-value
zf-C2H214616920.90.0049

Sequences