Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 557974

Identification

Species:
Populus trichocarpa
Gene model
557974
Description
eugene3.00091234
Family
C3H
3D structure (top 5)
1U6F 2YTC 1X4G 2F9D 2AD9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

203457 Score: 1
557974 Score: 0.929

Chlorella sp. NC64A

33881 Score: 1

Populus trichocarpa

203457 Score: 1
557974 Score: 0.932

Chlamydomonas reinhardtii

417182 Score: 1

Populus trichocarpa

203457 Score: 1
557974 Score: 0.929

Coccomyxa sp. C-169

29405 Score: 1

Populus trichocarpa

203457 Score: 1
557974 Score: 0.934

Populus trichocarpa

203457 Score: 1
557974 Score: 0.936

Populus trichocarpa

203457 Score: 1
557974 Score: 0.94

Populus trichocarpa

203457 Score: 1
557974 Score: 0.941

Expression data

Expressed Sequence Tags

At.12692
Arabidopsis thaliana At2g29580/F16P2.4 mRNA, complete cds /cds=p(89,1540) /gb=AF428354
At.25418
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT1G07360) mRNA, complete cds /cds=p(71,1516) /gb=NM_100610
At.54760
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G07060) mRNA, complete cds /cds=p(1,1092) /gb=NM_120788
Hv.2670
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf68d17, mRNA sequence /gb=AK250256
Os.17507
Oryza sativa Japonica Group cDNA clone:J013067M02, full insert sequence /cds=p(67,1515) /gb=AK120360
Os.5565
Oryza sativa Japonica Group cDNA clone:J023003O14, full insert sequence /gb=AK111689
Pba.5485
WS02550.C21_J17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_J17 3', mRNA sequence /clone=WS02550_J17 /clone_end=3' /gb=DT492399
Ppa.5833
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_185655) mRNA, complete cds /cds=p(227,1651) /gb=XM_001766453
Pth.12210
Q059H06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873783
Pth.5485
WS0233.B21_N13 PT-MB-A-13 Populus trichocarpa cDNA clone WS0233_N13 3', mRNA sequence /clone=WS0233_N13 /clone_end=3' /gb=CV239911
Sbi.1193
CCC1_74_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_74_H12_A007 5', mRNA sequence /clone=CCC1_74_H12_A007 /clone_end=5' /gb=CD221244 /gi=30964678
Vvi.1512
WIN013.BR_L15 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN013_L15 5', mRNA sequence /clone=WIN013_L15 /clone_end=5' /gb=EC920260
Vvi.19286
C1G03878 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G03878, mRNA sequence /clone=C1G03878 /gb=EE062734

Domain Architecture

zf-CCCH PF00642 557974
DomainStartEndBit scoreE-value
zf-CCCH15818318.80.0045
RRM_123029654.44e-13

Sequences