Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 559267

Identification

Species:
Populus trichocarpa
Gene model
559267
Description
eugene3.00050882
Family
MYB-related
3D structure (top 5)
2FQ3 2DCE 2COM 2YUS 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472410 Score: 1

Arabidopsis thaliana

AT1G21700.1 Score: 1

Ostreococcus lucimarinus

88885 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g08080.1 Score: 1

Sorghum bicolor

4822356 Score: 1

Vitis vinifera

GSVIVP00015425001 Score: 1

Zea mays

GRMZM2G139760_P01 Score: 1
GRMZM2G139760_P02 Score: 0.988
GRMZM2G139760_P04 Score: 0.981

Expression data

Expressed Sequence Tags

At.41645
Arabidopsis thaliana putative transcriptional regulatory protein (At1g21700) mRNA, complete cds /cds=p(160,2583) /gb=AY091026
Hv.29353
HU02H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02H10 5-PRIME, mRNA sequence /clone=HU02H10 /clone_end=5' /gb=BQ465032
Pba.1058
WS01230.B21_K24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_K24 3', mRNA sequence /clone=WS01230_K24 /clone_end=3' /gb=DT476747
Pba.825
WS02519.BR_L21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_L21 5', mRNA sequence /clone=WS02519_L21 /clone_end=5' /gb=DT477364
Pth.1058
WS01230.BR_K24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_K24 5', mRNA sequence /clone=WS01230_K24 /clone_end=5' /gb=DT474067
Pth.825
WS02519.BR_L21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_L21 5', mRNA sequence /clone=WS02519_L21 /clone_end=5' /gb=DT477364
Sbi.11568
LG1_313_G01.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW565021
Vvi.1002
S2B11008 Buds (VvS2) Vitis vinifera cDNA clone S2B11008, mRNA sequence /clone=S2B11008 /gb=EE077908

Domain Architecture

SWIRM PF04433 559267
DomainStartEndBit scoreE-value
SWIRM19128085.32e-22
Myb_DNA-binding414459445.5e-10

Sequences