Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 560536

Identification

Species:
Populus trichocarpa
Gene model
560536
Description
eugene3.00060495
Family
C3H
3D structure (top 5)
1SW6 2DVW 3D9H 2DZN 1YCS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488102 Score: 1

Arabidopsis thaliana

AT2G41900.1 Score: 1

Populus trichocarpa

560536 Score: 1
576336 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g49170.1 Score: 1
LOC_Os03g49170.3 Score: 0.953

Selaginella moellendorffii

62212 Score: 1

Vitis vinifera

GSVIVP00025561001 Score: 1

Zea mays

GRMZM2G024061_P01 Score: 1
GRMZM2G180979_P01 Score: 1
GRMZM2G180979_P02 Score: 1
GRMZM2G001279_P01 Score: 0.932

Expression data

Expressed Sequence Tags

At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
At.5281
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12850) mRNA, complete cds /cds=p(261,2381) /gb=NM_121288
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Mtr.4296
EST510150 HOGA Medicago truncatula cDNA clone pHOGA-23E11 5' end, mRNA sequence /clone=pHOGA-23E11 /clone_end=5' /gb=BG648531
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Pba.2984
WS01121.BR_A14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_A14 5', mRNA sequence /clone=WS01121_A14 /clone_end=5' /gb=DT495629
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5260
WIN025.TB24.1_L08 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_L08 3', mRNA sequence /clone=WIN025_L08 /clone_end=3' /gb=EC924525
Vvi.6858
CGF1000809_E08 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IIF_E08 5', mRNA sequence /clone=CAST0007_IIF_E08 /clone_end=5' /gb=CF213839

Domain Architecture

Ank PF00023 560536
DomainStartEndBit scoreE-value
Ank8712017.40.054
Ank12215729.89.8e-06
zf-CCCH30032526.40.00011

Sequences