Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 561711

Identification

Species:
Populus trichocarpa
Gene model
561711
Description
eugene3.00061670
Family
C3H
3D structure (top 5)
3D2Q 2E5S 2RPP 1M9O 3D2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491837 Score: 1

Arabidopsis thaliana

AT2G19810.1 Score: 1

Carica papaya

evm.TU.supercontig_1427.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g09620.1 Score: 1
LOC_Os01g09620.2 Score: 1

Sorghum bicolor

5001311 Score: 1

Vitis vinifera

GSVIVP00032141001 Score: 1

Zea mays

GRMZM2G173124_P02 Score: 1

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.20940
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G44260) mRNA, complete cds /cds=p(107,1252) /gb=NM_123793
At.43010
Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06 /cds=p(65,1246) /gb=AK117219
At.4530
Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds /cds=p(67,1137) /gb=AY045970
At.67031
AV530845 Arabidopsis thaliana flower buds Columbia Arabidopsis thaliana cDNA clone FB010d03F 3', mRNA sequence /clone=FB010d03F /clone_end=3' /gb=AV530845
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Os.80954
Oryza sativa Japonica Group cDNA, clone: J043017N22, full insert sequence /gb=AK287452
Pba.3311
WS01117.B21_K24 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_K24 3', mRNA sequence /clone=WS01117_K24 /clone_end=3' /gb=CV247290
Pba.4476
WS02528.B21_N11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_N11 3', mRNA sequence /clone=WS02528_N11 /clone_end=3' /gb=DT485665
Pth.3311
Populus trichocarpa clone WS01117_K24 unknown mRNA /cds=p(46,1200) /gb=EF144742
Pth.4476
WS02528.B21_N11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_N11 3', mRNA sequence /clone=WS02528_N11 /clone_end=3' /gb=DT485665
Sbi.18549
PI1_57_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE596523
Vvi.19273
VVH008E08_739651 CabSau Flower Nectary Stage 25 (NECu0025) Vitis vinifera cDNA clone VVH008E08 5, mRNA sequence /clone=VVH008E08 /clone_end=5' /gb=DT014104

Domain Architecture

zf-CCCH PF00642 561711
DomainStartEndBit scoreE-value
zf-CCCH12314827.55.1e-05

Sequences