Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 566362

Identification

Species:
Populus trichocarpa
Gene model
566362
Description
eugene3.00100920
Family
C2H2
3D structure (top 5)
2JP9 2CSH 2DLQ 1TF6 2I13
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

904431 Score: 1

Arabidopsis thaliana

AT2G02070.1 Score: 1

Carica papaya

evm.TU.supercontig_2.82 Score: 1

Sorghum bicolor

4888671 Score: 1
5058941 Score: 1

Vitis vinifera

GSVIVP00035131001 Score: 1

Zea mays

GRMZM2G179677_P02 Score: 1
GRMZM2G179677_P06 Score: 0.982

Expression data

Expressed Sequence Tags

At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
Mtr.22666
EST510375 HOGA Medicago truncatula cDNA clone pHOGA-23B12 5' end, mRNA sequence /clone=pHOGA-23B12 /clone_end=5' /gb=BG648756
Mtr.9921
MTYCV25TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256295
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.52565
Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence /gb=AK120723
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Pba.7341
WS02532.B21_F02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_F02 3', mRNA sequence /clone=WS02532_F02 /clone_end=3' /gb=DT486927
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.7341
WS02532.B21_F02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_F02 3', mRNA sequence /clone=WS02532_F02 /clone_end=3' /gb=DT486927

Domain Architecture

zf-C2H2 PF00096 566362
DomainStartEndBit scoreE-value
zf-C2H25476260.00014
zf-C2H213015221.60.0029

Sequences