Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 568665

Identification

Species:
Populus trichocarpa
Gene model
568665
Description
eugene3.00110679
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

492972 Score: 1

Arabidopsis thaliana

AT4G18880.1 Score: 1

Carica papaya

evm.TU.supercontig_124.1 Score: 1

Vitis vinifera

GSVIVP00035821001 Score: 1

Expression data

Expressed Sequence Tags

At.1951
Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds /cds=p(513,1718) /gb=AY125512
At.4244
Arabidopsis thaliana AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5); DNA binding / transcription factor (AT-HSFA5) mRNA, complete cds /cds=p(68,1468) /gb=NM_117472
Mtr.1982
EST639110 MTUS Medicago truncatula cDNA clone MTUS-39G8, mRNA sequence /clone=MTUS-39G8 /gb=CA921392
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ptp.7074
R034B08.3pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R034B08 3', mRNA sequence /clone=R034B08 /clone_end=3' /gb=DN488125
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 568665
DomainStartEndBit scoreE-value
HSF_DNA-bind12183221.61.8e-63

Sequences