Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 569394

Identification

Species:
Populus trichocarpa
Gene model
569394
Description
eugene3.00120047
Family
C2H2
3D structure (top 5)
2CSH 2DLQ 2I13 1TF6 2GLI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os09g27650.2 Score: 1

Physcomitrella patens

221736 Score: 1

Sorghum bicolor

4987506 Score: 1

Vitis vinifera

GSVIVP00017892001 Score: 1

Zea mays

GRMZM2G123094_P02 Score: 1

Expression data

Expressed Sequence Tags

At.23507
Arabidopsis thaliana ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14) (ATIDD14) mRNA, complete cds /cds=p(600,1601) /gb=NM_001084322
At.23909
Arabidopsis thaliana mRNA for adenylate translocator, complete cds, clone: RAFL07-94-L03 /cds=p(129,1274) /gb=AK226814
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42019
Arabidopsis thaliana ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5) (ATIDD15/SGR5) mRNA, complete cds /cds=p(378,1718) /gb=NM_001084399
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.51762
Arabidopsis thaliana ATIDD16 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 16); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD16) mRNA, complete cds /cds=p(1,1089) /gb=NM_102334
At.8713
Arabidopsis thaliana NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding (NUC) mRNA, complete cds /cds=p(151,1551) /gb=NM_123783
Mtr.17317
NF078A11IN1F1085 Insect herbivory Medicago truncatula cDNA clone NF078A11IN 5', mRNA sequence /clone=NF078A11IN /clone_end=5' /gb=BI265111
Os.50005
Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence /gb=AK119595
Os.5733
Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence /gb=AK288964
Os.80098
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence /gb=CT837698
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Pba.2108
WS01228.B21_M07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_M07 3', mRNA sequence /clone=WS01228_M07 /clone_end=3' /gb=DT476221
Pba.559
WS0122.BR_O19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0122_O19 5', mRNA sequence /clone=WS0122_O19 /clone_end=5' /gb=DT472047
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.2108
Populus trichocarpa clone WS01227_A11 unknown mRNA /cds=p(18,1286) /gb=EF147067
Pth.559
Populus trichocarpa clone WS0122_O19 unknown mRNA /cds=p(1043,1366) /gb=EF147359

Domain Architecture

zf-C2H2 PF00096 569394
DomainStartEndBit scoreE-value
zf-C2H2588027.35.5e-05
zf-C2H213515723.70.00066

Sequences