Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 570039

Identification

Species:
Populus trichocarpa
Gene model
570039
Description
eugene3.00120692
Family
E2F-DP
3D structure (top 5)
1CF7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485177 Score: 1

Arabidopsis thaliana

AT3G48160.2 Score: 1

Carica papaya

evm.TU.supercontig_35.31 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g50630.1 Score: 1

Physcomitrella patens

231478 Score: 1

Sorghum bicolor

4897135 Score: 1

Vitis vinifera

GSVIVP00016169001 Score: 1

Zea mays

GRMZM2G024688_P01 Score: 1
GRMZM2G060000_P01 Score: 1
GRMZM2G024688_P02 Score: 0.988
GRMZM2G060000_P02 Score: 0.988

Expression data

Expressed Sequence Tags

At.35736
Arabidopsis thaliana clone RAFL15-19-A14 (R20743) putative DP-E2F protein 1 (At3g48160) mRNA, complete cds /cds=p(311,1522) /gb=BT004258
Hv.28959
HDP12L12w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP12L12, mRNA sequence /clone=HDP12L12 /gb=EX590291
Os.47376
Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence /gb=AK111537
Os.50197
Oryza sativa Japonica Group cDNA clone:002-186-D11, full insert sequence /gb=AK120032
Vvi.12819
WIN054.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN054_B18 3', mRNA sequence /clone=WIN054_B18 /clone_end=3' /gb=EC935367

Domain Architecture

E2F_TDP PF02319 570039
DomainStartEndBit scoreE-value
E2F_TDP2085108.91.5e-29
E2F_TDP1562361161.1e-31

Sequences