Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 571988

Identification

Species:
Populus trichocarpa
Gene model
571988
Description
eugene3.00140033
Family
BSD
3D structure (top 5)
1X3A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G49800.1 Score: 1

Carica papaya

evm.TU.supercontig_129.77 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g52000.1 Score: 1

Physcomitrella patens

159259 Score: 1

Populus trichocarpa

243812 Score: 1
571988 Score: 1

Sorghum bicolor

5048217 Score: 1

Vitis vinifera

GSVIVP00010595001 Score: 1

Zea mays

GRMZM2G027535_P01 Score: 1

Expression data

Expressed Sequence Tags

Pba.6304
WS02549.C21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_E11 3', mRNA sequence /clone=WS02549_E11 /clone_end=3' /gb=DT491956
Pba.9952
WS02535.B21_D09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_D09 3', mRNA sequence /clone=WS02535_D09 /clone_end=3' /gb=DT487989
Pth.6304
WS02549.C21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_E11 3', mRNA sequence /clone=WS02549_E11 /clone_end=3' /gb=DT491956
Pth.9952
WS02515.B21_H22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_H22 3', mRNA sequence /clone=WS02515_H22 /clone_end=3' /gb=CV242594

Domain Architecture

BSD PF03909 571988
DomainStartEndBit scoreE-value
BSD19025676.86.9e-20

Sequences