Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 579857

Identification

Species:
Populus trichocarpa
Gene model
579857
Description
eugene3.11620003
Family
C3H
3D structure (top 5)
2RHK 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_1.267 Score: 1

Expression data

Expressed Sequence Tags

At.39718
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G20280) mRNA, complete cds /cds=p(1,1116) /gb=NM_127587
Hv.5360
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence /gb=AK250766
Os.32086
Oryza sativa Japonica Group cDNA clone:J033050C24, full insert sequence /gb=AK101559
Pba.7160
WS02533.B21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P10 3', mRNA sequence /clone=WS02533_P10 /clone_end=3' /gb=DT487535
Ppa.11399
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_24014) mRNA, partial cds /cds=p(1,1035) /gb=XM_001754460
Ppa.8194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_4327) mRNA, partial cds /cds=p(1,1071) /gb=XM_001778100
Pth.7160
WS02533.B21_P10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_P10 3', mRNA sequence /clone=WS02533_P10 /clone_end=3' /gb=DT487535

Domain Architecture

zf-CCCH PF00642 579857
DomainStartEndBit scoreE-value
zf-CCCH8911422.60.0014

Sequences