Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 58364

Identification

Species:
Physcomitrella patens
Gene model
58364
Description
fgenesh1_pm.scaffold_101000015
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

322431 Score: 1

Arabidopsis thaliana

AT2G47900.1 Score: 1
AT2G47900.2 Score: 1

Chlorella sp. NC64A

28000 Score: 1

Carica papaya

evm.TU.supercontig_9.163 Score: 1

Coccomyxa sp. C-169

25937 Score: 1

Micromonas pusilla CCMP1545

35442 Score: 1

Sorghum bicolor

123770 Score: 1

Physcomitrella patens

221905 Score: 1
58364 Score: 1
221902 Score: 0.957

Zea mays

GRMZM2G001272_P01 Score: 1
GRMZM2G001272_P02 Score: 1
GRMZM2G010531_P01 Score: 1
GRMZM2G010531_P02 Score: 1
GRMZM2G081869_P02 Score: 1
GRMZM2G114736_P03 Score: 1
GRMZM2G081869_P01 Score: 0.942
GRMZM2G114736_P01 Score: 0.942
GRMZM2G114736_P02 Score: 0.942

Expression data

Expressed Sequence Tags

At.17482
Arabidopsis thaliana AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (AtTLP1) mRNA, complete cds /cds=p(211,1578) /gb=NM_179563
At.18294
Arabidopsis thaliana AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (AtTLP6) mRNA, complete cds /cds=p(273,1514) /gb=NM_103621
At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.23717
Arabidopsis thaliana AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (AtTLP10) mRNA, complete cds /cds=p(578,1915) /gb=NM_102338
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
Hv.11650
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148o16, mRNA sequence /gb=AK252121
Hv.3532
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf138p02, mRNA sequence /gb=AK251904
Os.12718
Oryza sativa Japonica Group cDNA clone:J033089L13, full insert sequence /gb=AK102298
Os.15216
Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.18696
Oryza sativa Japonica Group cDNA clone:J033087L15, full insert sequence /gb=AK102221
Os.19114
Oryza sativa Japonica Group cDNA clone:J013023N16, full insert sequence /gb=AK098928
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.27120
Oryza sativa Japonica Group cDNA clone:J023001B21, full insert sequence /gb=AK120706
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.23639
CBAX6060.fwd CBAX Physcomitrella patens subsp. patens Gransden - dessicated (L) Physcomitrella patens subsp. patens cDNA clone CBAX6060 5', mRNA sequence /clone=CBAX6060 /clone_end=5' /gb=FC450251
Ppa.6169
CAYZ9906.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ9906 5', mRNA sequence /clone=CAYZ9906 /clone_end=5' /gb=FC430515
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

F-box PF00646 58364
DomainStartEndBit scoreE-value
F-box5611126.78.4e-05
Tub122414499.73.4e-147

Sequences