Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 585029

Identification

Species:
Populus trichocarpa
Gene model
585029
Description
eugene3.01700004
Family
SET
3D structure (top 5)
2F69 2R3A 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483538 Score: 1

Arabidopsis thaliana

AT2G44150.1 Score: 1

Chlorella sp. NC64A

18588 Score: 1
35816 Score: 1

Populus trichocarpa

562064 Score: 1
585029 Score: 1

Carica papaya

evm.TU.supercontig_9.229 Score: 1

Micromonas pusilla CCMP1545

23211 Score: 1

Ostreococcus lucimarinus

5572 Score: 1
5592 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g13740.1 Score: 1
LOC_Os09g13740.2 Score: 1

Physcomitrella patens

33525 Score: 1

Sorghum bicolor

5051031 Score: 1

Selaginella moellendorffii

110353 Score: 1

Vitis vinifera

GSVIVP00013886001 Score: 1

Zea mays

GRMZM2G033694_P01 Score: 1
GRMZM2G033694_P02 Score: 1
GRMZM2G033694_P03 Score: 0.984

Expression data

Expressed Sequence Tags

At.25522
Arabidopsis thaliana ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) (ASHH3) mRNA, complete cds /cds=p(254,1345) /gb=NM_129978
At.54011
Arabidopsis thaliana ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4) (ASHH4) mRNA, complete cds /cds=p(1,1059) /gb=NM_115859
Hv.12502
HDP16P06w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP16P06, mRNA sequence /clone=HDP16P06 /gb=EX582359
Hv.2514
HVSMEg0018E08f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0018E08f, mRNA sequence /clone=HVSMEg0018E08f /gb=BG345006
Pth.11632
F030P10.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F030P10 5', mRNA sequence /clone=F030P10 /clone_end=5' /gb=CK101207

Domain Architecture

SET PF00856 585029
DomainStartEndBit scoreE-value
SET107236186.28e-53

Sequences