Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 590053

Identification

Species:
Populus trichocarpa
Gene model
590053
Description
eugene3.00290236
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_90.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42690.1 Score: 1

Sorghum bicolor

5048994 Score: 1

Vitis vinifera

GSVIVP00015690001 Score: 1

Zea mays

GRMZM2G180086_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10092
Arabidopsis thaliana ELF6 (EARLY FLOWERING 6); transcription factor (ELF6) mRNA, complete cds /cds=p(1,4023) /gb=NM_120506
At.55411
Arabidopsis thaliana transcription factor jumonji (jmj) family protein (AT5G46910) mRNA, complete cds /cds=p(1,2124) /gb=NM_124062
Os.7130
Oryza sativa Japonica Group cDNA clone:J033044E04, full insert sequence /cds=p(259,2835) /gb=AK073475
Ppa.20331
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_167193) mRNA, complete cds /cds=p(1,6099) /gb=XM_001771491

Domain Architecture

JmjN PF02375 590053
DomainStartEndBit scoreE-value
JmjN10314735.42e-07
JmjC279402189.39.8e-54
zf-C5HC249955235.71.7e-07

Sequences