Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 594422

Identification

Species:
Populus trichocarpa
Gene model
594422
Description
eugene3.00640010
Family
SET
3D structure (top 5)
3H6L 2R3A 2W5Y 1ML9 3BO5
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493373 Score: 1

Arabidopsis thaliana

AT4G15180.1 Score: 1

Carica papaya

evm.TU.supercontig_8.248 Score: 1

Sorghum bicolor

4763578 Score: 1

Selaginella moellendorffii

447947 Score: 1

Vitis vinifera

GSVIVP00026090001 Score: 1

Zea mays

GRMZM2G149153_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21894
Arabidopsis thaliana unknown protein (AT4G15180) mRNA, complete cds /cds=p(439,7446) /gb=NM_117606
Mtr.11571
EST1225091 MTY Medicago truncatula cDNA clone MTYAD49, mRNA sequence /clone=MTYAD49 /gb=DW016130
Mtr.8961
AJ498907 MTPOSE Medicago truncatula cDNA clone mt--acc955210a04, mRNA sequence /clone=mt--acc955210a04 /gb=AJ498907
Os.18478
Oryza sativa Japonica Group cDNA clone:J023150L05, full insert sequence /gb=AK121489
Pba.10993
WS02521.B21_F22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_F22 3', mRNA sequence /clone=WS02521_F22 /clone_end=3' /gb=DT483000
Pba.1228
WS02527.BR_D20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_D20 5', mRNA sequence /clone=WS02527_D20 /clone_end=5' /gb=DT479878
Ppa.20013
Physcomitrella patens subsp. patens predicted protein (SDG1515) mRNA, complete cds /cds=p(1,8559) /gb=XM_001770195
Pth.10993
WS02521.B21_F22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_F22 3', mRNA sequence /clone=WS02521_F22 /clone_end=3' /gb=DT483000
Pth.1228
WS02527.BR_D20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_D20 5', mRNA sequence /clone=WS02527_D20 /clone_end=5' /gb=DT479878
Ptp.2260
C038P76.5pR Populus strain T89 leaves Populus tremula x Populus tremuloides cDNA clone C038P76 5', mRNA sequence /clone=C038P76 /clone_end=5' /gb=CK100499
Vvi.18337
VVG038F01_758613 CabSau Cell Culture (CELu0001) Vitis vinifera cDNA clone VVG038F01 5, mRNA sequence /clone=VVG038F01 /clone_end=5' /gb=DT006849

Domain Architecture

SET PF00856 594422
DomainStartEndBit scoreE-value
SET1897205288.81.7e-23

Sequences