Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 6198

Identification

Species:
Physcomitrella patens
Gene model
6198
Description
gw1.154.2.1
Family
HB
3D structure (top 5)
1FJL 2H1K 1UHS 1AU7 1ZQ3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

6140 Score: 1
6198 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g37580.1 Score: 1
LOC_Os09g29460.1 Score: 1

Sorghum bicolor

149329 Score: 1

Expression data

Expressed Sequence Tags

Ppa.10674
BY991514 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS139G11 5', mRNA sequence /clone=PPLS139G11 /clone_end=5' /gb=BY991514
Ppa.11132
Physcomitrella patens mRNA for homeobox protein PpHB9, complete cds /cds=p(1,657) /gb=AB028080
Ppa.11823
Physcomitrella patens mRNA for homeobox protein PpHB6, complete cds /cds=p(240,1277) /gb=AB028077
Ppa.14003
Physcomitrella patens mRNA for homeobox protein PpHB5, complete cds /cds=p(375,1298) /gb=AB028076
Ppa.157
Physcomitrella patens mRNA for homeobox protein Pphb8, complete cds /cds=p(191,1081) /gb=AB028079
Ppa.161
Physcomitrella patens mRNA for homeobox protein PpHB2, partial cds /cds=p(1,821) /gb=AB028073
Ppa.162
Physcomitrella patens mRNA for homeobox protein PpHB1, partial cds /cds=p(1,793) /gb=AB028072
Ppa.19715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_127355) mRNA, complete cds /cds=p(1,1041) /gb=XM_001763980
Ppa.25898
DC936717 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs23c15 5', mRNA sequence /clone=ppgs23c15 /clone_end=5' /gb=DC936717
Ppa.8098
BY991229 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS138K14 5', mRNA sequence /clone=PPLS138K14 /clone_end=5' /gb=BY991229
Ppa.8325
BY954724 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS041L22 5', mRNA sequence /clone=PPLS041L22 /clone_end=5' /gb=BY954724
Ppa.9753
BJ968285 ppsp full-length cDNA libary Physcomitrella patens subsp. patens cDNA clone ppsp46c11 5', mRNA sequence /clone=ppsp46c11 /clone_end=5' /gb=BJ968285

Domain Architecture

Homeobox PF00046 6198
DomainStartEndBit scoreE-value
Homeobox7112567.83.7e-17
HALZ12617036.11.2e-07

Sequences