Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 641429

Identification

Species:
Populus trichocarpa
Gene model
641429
Description
grail3.0053012801
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os03g25120.1 Score: 1
LOC_Os07g44690.1 Score: 1

Sorghum bicolor

4966952 Score: 1
5034734 Score: 1

Populus trichocarpa

557710 Score: 1
641429 Score: 1

Vitis vinifera

GSVIVP00017248001 Score: 1

Zea mays

GRMZM2G177988_P01 Score: 1

Expression data

Expressed Sequence Tags

At.49954
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB79ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX814533
Mtr.18292
NF091C11FL1F1085 Developing flower Medicago truncatula cDNA clone NF091C11FL 5', mRNA sequence /clone=NF091C11FL /clone_end=5' /gb=BI272767
Os.50643
Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence /cds=p(96,1028) /gb=AK063952
Os.68844
73289rsicem_6705.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CK067449
Pba.10851
WS01226.BR_I21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I21 5', mRNA sequence /clone=WS01226_I21 /clone_end=5' /gb=DT472578
Pba.2165
WS0198.B21_J18 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0198_J18 3', mRNA sequence /clone=WS0198_J18 /clone_end=3' /gb=CV232768
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.367
Populus trichocarpa clone WS0125_K14 unknown mRNA /cds=p(145,1251) /gb=EF147879
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055

Domain Architecture

HSF_DNA-bind PF00447 641429
DomainStartEndBit scoreE-value
HSF_DNA-bind22213169.96.5e-48

Sequences