Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 641884

Identification

Species:
Populus trichocarpa
Gene model
641884
Description
grail3.0017011001
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.4244
Arabidopsis thaliana AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5); DNA binding / transcription factor (AT-HSFA5) mRNA, complete cds /cds=p(68,1468) /gb=NM_117472
Hv.18901
HVSMEb0008B10f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0008B10f, mRNA sequence /clone=HVSMEb0008B10f /gb=BF628773
Mtr.12448
MTYDR37TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV259038
Pba.3590
F069P30.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F069P30 3', mRNA sequence /clone=F069P30 /clone_end=3' /gb=CK091278
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.3590
F069P30.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F069P30 3', mRNA sequence /clone=F069P30 /clone_end=3' /gb=CK091278
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 641884
DomainStartEndBit scoreE-value
HSF_DNA-bind1157170.93.3e-48

Sequences