Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 645998

Identification

Species:
Populus trichocarpa
Gene model
645998
Description
grail3.0037016601
Family
MYB-related
3D structure (top 5)
1IRZ 2ELK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479087 Score: 1

Arabidopsis thaliana

AT3G16350.1 Score: 1

Carica papaya

evm.TU.supercontig_2092.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g09280.1 Score: 1

Sorghum bicolor

5052516 Score: 1

Vitis vinifera

GSVIVP00034313001 Score: 1

Zea mays

GRMZM2G099919_P01 Score: 1
GRMZM2G099919_P02 Score: 1

Expression data

Expressed Sequence Tags

At.47678
Arabidopsis thaliana myb family transcription factor (AT3G16350) mRNA, complete cds /cds=p(111,1274) /gb=NM_112506
Mtr.14074
EST1226559 MTY Medicago truncatula cDNA clone MTYAV63, mRNA sequence /clone=MTYAV63 /gb=DW017598
Mtr.3679
EST1224491 MTY Medicago truncatula cDNA clone MTYA640, mRNA sequence /clone=MTYA640 /gb=DW015530
Pba.10630
WS02519.B21_J04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_J04 3', mRNA sequence /clone=WS02519_J04 /clone_end=3' /gb=DT482346
Pth.10577
Populus trichocarpa clone WS01230_F05 unknown mRNA /cds=p(116,1054) /gb=EF147391
Pth.10630
WS02519.B21_J04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_J04 3', mRNA sequence /clone=WS02519_J04 /clone_end=3' /gb=DT482346
Vvi.1267
VV_PEd0010c02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV239979
Vvi.23289
VV_PEd03f02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241970

Domain Architecture

Myb_DNA-binding PF00249 645998
DomainStartEndBit scoreE-value
Myb_DNA-binding11316044.24.5e-10

Sequences