Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 647036

Identification

Species:
Populus trichocarpa
Gene model
647036
Description
grail3.0047013501
Family
MADS
3D structure (top 5)
1K6O 1MNM 1N6J 1EGW 1HBX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472923 Score: 1

Arabidopsis thaliana

AT1G24260.2 Score: 1
AT1G24260.1 Score: 0.949

Carica papaya

evm.TU.supercontig_43.69 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g32948.1 Score: 1

Sorghum bicolor

5000201 Score: 1

Vitis vinifera

GSVIVP00002777001 Score: 1

Zea mays

GRMZM2G067608_P01 Score: 1
GRMZM2G129034_P01 Score: 1
GRMZM2G067608_P02 Score: 0.952

Expression data

Expressed Sequence Tags

At.10163
Arabidopsis thaliana SEP1 (SEPALLATA1) (SEP1) mRNA, complete cds /cds=p(388,1176) /gb=NM_001125758
At.10200
Arabidopsis thaliana SEP4 (SEPALLATA4); DNA binding (SEP4) mRNA, complete cds /cds=p(334,897) /gb=NM_201682
At.24086
Arabidopsis thaliana SEP3 (SEPALLATA3); transcription factor (SEP3) mRNA, complete cds /cds=p(237,992) /gb=NM_102272
At.41155
Arabidopsis thaliana SEP2 (SEPALLATA2); DNA binding / transcription factor (SEP2) mRNA, complete cds /cds=p(388,1140) /gb=NM_111098
Hv.21035
Hordeum vulgare subsp. vulgare AGAMOUS LIKE6-like protein mRNA, complete cds /cds=p(387,1178) /gb=AY541067
Hv.23708
Hordeum vulgare mRNA for MADS-box protein 9 (m9 gene) /cds=p(158,898) /gb=AJ249147
Hv.29973
HVSMEh0081M10f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0081M10f, mRNA sequence /clone=HVSMEh0081M10f /gb=BE193581
Hv.547
HVSMEh0089O24f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0089O24f, mRNA sequence /clone=HVSMEh0089O24f /gb=BE195618
Os.10941
Oryza sativa Japonica Group cDNA, clone: J090095D11, full insert sequence /gb=AK289080
Os.2236
Oryza sativa (japonica cultivar-group) MADS-box protein RMADS216 mRNA, complete cds /cds=p(156,1088) /gb=AY551921
Os.2352
Oryza sativa (japonica cultivar-group) MADS-box protein RMADS213 mRNA, complete cds /cds=p(138,887) /gb=AY551918
Os.4367
RECm0405 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI071L01, EI063J04, BI101E11, BI110H19 5', mRNA sequence /clone=BI071L01,_EI063J04,_BI101E11,_BI110H19 /clone_end=5' /gb=CX099716
Os.7271
Oryza sativa Japonica Group cDNA clone:J023006N09, full insert sequence /cds=p(134,886) /gb=AK069103
Pth.12288
V016F11 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU876142
Pth.3495
V007C11 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU875452
Sbi.13594
Sorghum bicolor MADS box transcription factor SbMADS1 mRNA, complete cds /cds=p(46,741) /gb=U49734
Vvi.11773
C3B05212 Clusters 4 cm (VvC3) Vitis vinifera cDNA clone C3B05212, mRNA sequence /clone=C3B05212 /gb=EE070958
Vvi.3
Vitis vinifera MADS-box protein 3 (MADS3) mRNA, complete cds /cds=p(99,833) /gb=AF373602
Vvi.3096
Vitis vinifera MADS-box protein 4 (MADS4) mRNA, complete cds /cds=p(99,827) /gb=AF373603
Vvi.4
Vitis vinifera MADS-box protein 2 (MADS2) mRNA, complete cds /cds=p(103,837) /gb=AF373601

Domain Architecture

SRF-TF PF00319 647036
DomainStartEndBit scoreE-value
SRF-TF959120.35.5e-33
K-box75175147.63.4e-41

Sequences

protein sequence
transcript sequence