Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 647251

Identification

Species:
Populus trichocarpa
Gene model
647251
Description
grail3.0074003801
Family
C3H
3D structure (top 5)
2E5G 1M9O 3D2W 1WF0 2DGS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_197.21 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g21140.1 Score: 1
LOC_Os03g21140.2 Score: 0.993

Sorghum bicolor

5034872 Score: 1
5062368 Score: 1

Populus trichocarpa

647251 Score: 1
675178 Score: 1

Zea mays

GRMZM2G003424_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Pba.6544
WS02542.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G18 3', mRNA sequence /clone=WS02542_G18 /clone_end=3' /gb=DT489508
Pba.8270
WS02527.BR_F19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_F19 5', mRNA sequence /clone=WS02527_F19 /clone_end=5' /gb=DT479915
Pth.11796
F081P14Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI137151
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595
Pth.6544
WS02542.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G18 3', mRNA sequence /clone=WS02542_G18 /clone_end=3' /gb=DT489508
Ptp.2617
X034A10 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU895996
Vvi.13513
CAB10006_IIIa_Fa_F02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_F02 5', mRNA sequence /clone=CAB10006_IIIa_Fa_F02 /clone_end=5' /gb=CB971846
Vvi.22399
WIN0523.C21_N12 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0523_N12 3', mRNA sequence /clone=WIN0523_N12 /clone_end=3' /gb=EC941824

Domain Architecture

zf-CCCH PF00642 647251
DomainStartEndBit scoreE-value
zf-CCCH20623125.20.00024
RRM_133740519.30.0025

Sequences