Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 655329

Identification

Species:
Populus trichocarpa
Gene model
655329
Description
grail3.0019021002
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480735 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g47640.1 Score: 1

Sorghum bicolor

5055722 Score: 1

Vitis vinifera

GSVIVP00024911001 Score: 1

Zea mays

GRMZM2G046158_P01 Score: 1
GRMZM2G115701_P01 Score: 1
GRMZM2G176340_P01 Score: 0.912

Expression data

Expressed Sequence Tags

At.18294
Arabidopsis thaliana AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (AtTLP6) mRNA, complete cds /cds=p(273,1514) /gb=NM_103621
At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.23717
Arabidopsis thaliana AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (AtTLP10) mRNA, complete cds /cds=p(578,1915) /gb=NM_102338
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
Hv.11650
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148o16, mRNA sequence /gb=AK252121
Os.12718
Oryza sativa Japonica Group cDNA clone:J033089L13, full insert sequence /gb=AK102298
Os.15216
Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Pba.2402
WS0193.B21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_E06 3', mRNA sequence /clone=WS0193_E06 /clone_end=3' /gb=CV231007
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.2402
WS0193.B21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_E06 3', mRNA sequence /clone=WS0193_E06 /clone_end=3' /gb=CV231007
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106
Ptp.2238
T024G11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU831713

Domain Architecture

F-box PF00646 655329
DomainStartEndBit scoreE-value
F-box5310825.70.00017
Tub119410453.43.1e-133

Sequences