Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 6570

Identification

Species:
Physcomitrella patens
Gene model
6570
Description
gw1.65.7.1
Family
HB
3D structure (top 5)
1NK2 2R5Y 1PUF 2DMT 1B72
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

150953 Score: 1
6570 Score: 1

Arabidopsis thaliana

AT1G69780.1 Score: 1
AT5G15150.1 Score: 1

Physcomitrella patens

174493 Score: 1
6570 Score: 1

Carica papaya

evm.TU.supercontig_1379.1 Score: 1
evm.TU.supercontig_17.180 Score: 1

Sorghum bicolor

147812 Score: 1
4745673 Score: 1
5048886 Score: 1

Physcomitrella patens

234989 Score: 1
6570 Score: 1
6648 Score: 1

Physcomitrella patens

120051 Score: 1
6570 Score: 1

Vitis vinifera

GSVIVP00000088001 Score: 1
GSVIVP00028981001 Score: 1

Zea mays

GRMZM2G041127_P03 Score: 1
GRMZM2G041127_P04 Score: 1

Expression data

Expressed Sequence Tags

Ppa.10674
BY991514 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS139G11 5', mRNA sequence /clone=PPLS139G11 /clone_end=5' /gb=BY991514
Ppa.10911
Physcomitrella patens subsp. patens predicted protein (Pphb7) mRNA, complete cds /cds=p(234,1265) /gb=XM_001753088
Ppa.11132
Physcomitrella patens mRNA for homeobox protein PpHB9, complete cds /cds=p(1,657) /gb=AB028080
Ppa.11823
Physcomitrella patens mRNA for homeobox protein PpHB6, complete cds /cds=p(240,1277) /gb=AB028077
Ppa.157
Physcomitrella patens mRNA for homeobox protein Pphb8, complete cds /cds=p(191,1081) /gb=AB028079
Ppa.161
Physcomitrella patens mRNA for homeobox protein PpHB2, partial cds /cds=p(1,821) /gb=AB028073
Ppa.162
Physcomitrella patens mRNA for homeobox protein PpHB1, partial cds /cds=p(1,793) /gb=AB028072
Ppa.19715
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_127355) mRNA, complete cds /cds=p(1,1041) /gb=XM_001763980
Ppa.25898
DC936717 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs23c15 5', mRNA sequence /clone=ppgs23c15 /clone_end=5' /gb=DC936717
Ppa.8098
BY991229 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS138K14 5', mRNA sequence /clone=PPLS138K14 /clone_end=5' /gb=BY991229
Ppa.9753
BJ968285 ppsp full-length cDNA libary Physcomitrella patens subsp. patens cDNA clone ppsp46c11 5', mRNA sequence /clone=ppsp46c11 /clone_end=5' /gb=BJ968285
Pth.17274
Populus trichocarpa clone WS0125_E07 unknown mRNA /cds=p(469,1413) /gb=EF147822
Pth.9592
Populus trichocarpa clone WS0126_C14 unknown mRNA /cds=p(603,1589) /gb=EF147945
Vvi.4667
WIN0812.C21_D17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_D17 3', mRNA sequence /clone=WIN0812_D17 /clone_end=3' /gb=EC961661

Domain Architecture

Homeobox PF00046 6570
DomainStartEndBit scoreE-value
Homeobox9214665.91.3e-16
HALZ14719149.21.5e-11

Sequences