Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 657068

Identification

Species:
Populus trichocarpa
Gene model
657068
Description
grail3.0009000601
Family
C3H
3D structure (top 5)
2RPP 2E5S 3D2N 3D2Q 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G02160.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g57600.1 Score: 1

Sorghum bicolor

4985725 Score: 1

Vitis vinifera

GSVIVP00021274001 Score: 1

Zea mays

GRMZM2G041799_P01 Score: 1
GRMZM2G181581_P01 Score: 1

Expression data

Expressed Sequence Tags

Pba.5881
WS02547.C21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_H24 3', mRNA sequence /clone=WS02547_H24 /clone_end=3' /gb=DT491354
Pba.6743
WS02537.B21_L01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_L01 3', mRNA sequence /clone=WS02537_L01 /clone_end=3' /gb=DT488876
Pth.12309
WS02547.C21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_H24 3', mRNA sequence /clone=WS02547_H24 /clone_end=3' /gb=DT491354
Pth.6743
WS02537.B21_L01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_L01 3', mRNA sequence /clone=WS02537_L01 /clone_end=3' /gb=DT488876

Domain Architecture

zf-CCCH PF00642 657068
DomainStartEndBit scoreE-value
zf-CCCH1138130.026
zf-CCCH42663.90.42
zf-CCCH102127283.6e-05

Sequences