Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 66240

Identification

Species:
Micromonas sp. RCC299
Gene model
66240
Description
gw2.15.32.1
Family
TRAF
3D structure (top 5)
2Z6H 1WA5 1JDH 1XM9 2W3C
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488817 Score: 1

Arabidopsis thaliana

AT5G19330.1 Score: 1

Chlorella sp. NC64A

134999 Score: 1

Carica papaya

evm.TU.supercontig_370.10 Score: 1

Chlamydomonas reinhardtii

398723 Score: 1

Coccomyxa sp. C-169

81096 Score: 1

Micromonas pusilla CCMP1545

29724 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g33050.1 Score: 1

Physcomitrella patens

106616 Score: 1

Populus trichocarpa

419382 Score: 1

Sorghum bicolor

5060460 Score: 1

Selaginella moellendorffii

164824 Score: 1

Vitis vinifera

GSVIVP00023713001 Score: 1

Zea mays

GRMZM2G100946_P01 Score: 1
GRMZM2G178375_P01 Score: 1

Expression data

Expressed Sequence Tags

Mtr.12877
AC0646 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615563
Ppa.18257
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106616) mRNA, complete cds /cds=p(1,2088) /gb=XM_001766720
Ppa.6194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106476) mRNA, complete cds /cds=p(1,2097) /gb=XM_001765868
Vvi.24033
WIN052.C21_F19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_F19 3', mRNA sequence /clone=WIN052_F19 /clone_end=3' /gb=EC934792

Domain Architecture

Arm PF00514 66240
DomainStartEndBit scoreE-value
Arm156318.50.027
Arm6510540.46.9e-09
Arm10714741.43.6e-09
Arm14918921.80.0028
Arm19523529.41.4e-05
HEAT20123722.30.002
Arm23627623.20.0011
BTB42155117.10.00057

Sequences