Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 664543

Identification

Species:
Populus trichocarpa
Gene model
664543
Description
grail3.0012003101
Family
mTERF

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

490263 Score: 1

Arabidopsis thaliana

AT4G02990.1 Score: 1

Carica papaya

evm.TU.supercontig_9.122 Score: 1

Chlamydomonas reinhardtii

330898 Score: 1

Populus trichocarpa

199625 Score: 1
664543 Score: 1
782607 Score: 1

Micromonas pusilla CCMP1545

54140 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g33500.1 Score: 1

Physcomitrella patens

22916 Score: 1

Sorghum bicolor

5009620 Score: 1

Selaginella moellendorffii

92242 Score: 1

Vitis vinifera

GSVIVP00023645001 Score: 1

Zea mays

GRMZM2G029933_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10877
Arabidopsis thaliana mitochondrial transcription termination factor family protein / mTERF family protein (AT4G02990) mRNA, complete cds /cds=p(68,1693) /gb=NM_116533
At.19499
Arabidopsis thaliana mitochondrial transcription termination factor-related / mTERF-related (AT2G44020) mRNA, complete cds /cds=p(126,1649) /gb=NM_129964
Hv.9484
AV942541 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah12j09 3', mRNA sequence /clone=bah12j09 /clone_end=3' /gb=AV942541
Mtr.13237
EST640968 GPOD Medicago truncatula cDNA clone GPOD-34C21, mRNA sequence /clone=GPOD-34C21 /gb=CA916821
Mtr.21674
MEUA346TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE343632
Os.35826
Oryza sativa Japonica Group cDNA clone:002-103-E12, full insert sequence /gb=AK064154
Os.4917
Oryza sativa Japonica Group cDNA clone:J033108O14, full insert sequence /cds=p(57,1583) /gb=AK102821
Os.87537
CT859713 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCRA111N18, mRNA sequence /clone=OSIGCRA111N18 /gb=CT859713
Vvi.8305
WIN0544.C21_C21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0544_C21 3', mRNA sequence /clone=WIN0544_C21 /clone_end=3' /gb=EC948269

Domain Architecture

mTERF PF02536 664543
DomainStartEndBit scoreE-value
mTERF132479455.56.9e-134

Sequences