Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 666581

Identification

Species:
Populus trichocarpa
Gene model
666581
Description
grail3.0005020801
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_53.92 Score: 1

Coccomyxa sp. C-169

42215 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g05680.1 Score: 1

Sorghum bicolor

4995736 Score: 1

Expression data

Expressed Sequence Tags

At.3169
Arabidopsis thaliana REF6 (RELATIVE OF EARLY FLOWERING 6); transcription factor (REF6) mRNA, complete cds /cds=p(1,4083) /gb=NM_148863
Os.48706
Oryza sativa (japonica cultivar-group) Os12g0279100 (Os12g0279100) mRNA, complete cds /cds=p(164,4264) /gb=NM_001073104
Os.52727
Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence /gb=AK068952

Domain Architecture

JmjN PF02375 666581
DomainStartEndBit scoreE-value
JmjN317533.29.4e-07
JmjC22930626.82.9e-06

Sequences