Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 668840

Identification

Species:
Populus trichocarpa
Gene model
668840
Description
grail3.0007007902
Family
Alfin-like
3D structure (top 5)
1WEP 2RI7 1WEE 2E6S 1WEU
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

910088 Score: 1

Arabidopsis thaliana

AT5G20510.1 Score: 1

Carica papaya

evm.TU.supercontig_28.89 Score: 1

Populus trichocarpa

668840 Score: 1.008
717823 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g66420.1 Score: 1
LOC_Os07g41740.1 Score: 1
LOC_Os11g14010.1 Score: 1

Physcomitrella patens

147516 Score: 1

Sorghum bicolor

148868 Score: 1
5009668 Score: 1

Populus trichocarpa

668840 Score: 1.008
717823 Score: 1

Populus trichocarpa

668840 Score: 1
717823 Score: 0.905

Selaginella moellendorffii

99900 Score: 1

Vitis vinifera

GSVIVP00032250001 Score: 1

Zea mays

GRMZM2G038066_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.27503
Arabidopsis thaliana PHD finger family protein (AT1G14510) mRNA, complete cds /cds=p(275,1033) /gb=NM_101318
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
At.49064
Arabidopsis thaliana PHD finger family protein (AT5G26210) mRNA, complete cds /cds=p(163,930) /gb=NM_122522
At.68535
Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.5712
HWM012cA.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cA.10, mRNA sequence /clone=HWM012cA.10 /gb=BE421625
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.13758
EST669369 MTUS Medicago truncatula cDNA clone MTUS-10F11, mRNA sequence /clone=MTUS-10F11 /gb=CF068648
Mtr.7514
Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.2294
Oryza sativa (japonica cultivar-group) Os01g0887700 (Os01g0887700) mRNA, complete cds /cds=p(225,1043) /gb=NM_001051571
Os.69757
Oryza sativa Japonica Group cDNA clone:J033046L10, full insert sequence /cds=p(85,888) /gb=AK073526
Os.9567
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA045I06, full insert sequence /gb=CT829243
Os.9870
Oryza sativa Japonica Group cDNA clone:001-104-H11, full insert sequence /cds=p(76,912) /gb=AK109447
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.15907
WS02526.BR_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_H14 5', mRNA sequence /clone=WS02526_H14 /clone_end=5' /gb=DT479632
Vvi.19056
WIN058.C21_B14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN058_B14 3', mRNA sequence /clone=WIN058_B14 /clone_end=3' /gb=EC938930
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152

Domain Architecture

PHD PF00628 668840
DomainStartEndBit scoreE-value
PHD19924953.95.7e-13
Alfin-like200246123.97.6e-37

Sequences