Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 671662

Identification

Species:
Populus trichocarpa
Gene model
671662
Description
grail3.0133001302
Family
C2H2
3D structure (top 5)
1TF6 2DMD 2YT9 1UBD 2DMI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os02g45054.2 Score: 1
LOC_Os02g45054.3 Score: 1
LOC_Os02g45054.4 Score: 1

Sorghum bicolor

4803992 Score: 1

Selaginella moellendorffii

93509 Score: 1

Vitis vinifera

GSVIVP00024976001 Score: 1

Zea mays

GRMZM2G177693_P02 Score: 1

Expression data

Expressed Sequence Tags

At.13356
Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds /cds=p(67,1875) /gb=AY056174
At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.22283
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT3G45260) mRNA, complete cds /cds=p(149,1489) /gb=NM_114395
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.8713
Arabidopsis thaliana NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding (NUC) mRNA, complete cds /cds=p(151,1551) /gb=NM_123783
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Mtr.13451
EST529264 GPOD Medicago truncatula cDNA clone pGPOD-1G17 5' end, mRNA sequence /clone=pGPOD-1G17 /clone_end=5' /gb=BI307854
Mtr.9921
MTYCV25TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256295
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.54518
Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence /gb=AK289209
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 671662
DomainStartEndBit scoreE-value
zf-C2H28110326.40.0001
zf-C2H215717922.20.0019

Sequences