Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 675178

Identification

Species:
Populus trichocarpa
Gene model
675178
Description
grail3.0220000401
Family
C3H
3D structure (top 5)
2E5G 1WF0 3D2W 2FY1 2CPF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485553 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Sorghum bicolor

5034872 Score: 1
5062368 Score: 1

Populus trichocarpa

647251 Score: 1
675178 Score: 1

Expression data

Expressed Sequence Tags

Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Os.49095
Oryza sativa Japonica Group cDNA, clone: J090052G18, full insert sequence /gb=AK288601
Os.56196
Oryza sativa Japonica Group cDNA clone:002-180-B08, full insert sequence /gb=AK119893
Os.80130
Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence /gb=AK102918
Pba.8270
WS02527.BR_F19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_F19 5', mRNA sequence /clone=WS02527_F19 /clone_end=5' /gb=DT479915
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595
Ptp.2617
X034A10 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU895996
Vvi.13513
CAB10006_IIIa_Fa_F02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_F02 5', mRNA sequence /clone=CAB10006_IIIa_Fa_F02 /clone_end=5' /gb=CB971846
Vvi.22399
WIN0523.C21_N12 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0523_N12 3', mRNA sequence /clone=WIN0523_N12 /clone_end=3' /gb=EC941824

Domain Architecture

zf-CCCH PF00642 675178
DomainStartEndBit scoreE-value
zf-CCCH23225725.20.00024

Sequences