Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 67715

Identification

Species:
Micromonas pusilla CCMP1545
Gene model
67715
Description
est_orfs.18_6698_4273011:2
Family
C3H
3D structure (top 5)
1S70 2FO1 3D9H 1YCS 3F6Q
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495985 Score: 1

Arabidopsis thaliana

AT2G40140.1 Score: 1
AT2G40140.2 Score: 1

Carica papaya

evm.TU.supercontig_112.7 Score: 1

Populus trichocarpa

173205 Score: 1
833761 Score: 1

Selaginella moellendorffii

62212 Score: 1

Zea mays

GRMZM2G099622_P03 Score: 1

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.23916
Arabidopsis thaliana ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor (ATCTH) mRNA, complete cds /cds=p(100,1047) /gb=NM_128150
At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392

Domain Architecture

Ank PF00023 67715
DomainStartEndBit scoreE-value
Ank3363.312
Ank659742.61.6e-09
Ank100135110.96
zf-CCCH36438922.30.0017

Sequences