Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 681001

Identification

Species:
Populus trichocarpa
Gene model
681001
Description
grail3.0086000101
Family
C2H2
3D structure (top 5)
1UBD 2JP9 2GLI 1TF6 2I13
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489687 Score: 1

Arabidopsis thaliana

AT4G06634.1 Score: 1

Carica papaya

evm.TU.supercontig_161.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g34680.1 Score: 1

Sorghum bicolor

4756567 Score: 1

Selaginella moellendorffii

35059 Score: 1

Vitis vinifera

GSVIVP00035425001 Score: 1

Zea mays

GRMZM2G165581_P01 Score: 1
GRMZM2G165581_P02 Score: 0.987

Expression data

Expressed Sequence Tags

At.47264
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT4G06634) mRNA, complete cds /cds=p(315,1364) /gb=NM_001036512
Mtr.11713
Medicago truncatula clone MTYFL_FM_FN_FO1G-E-11 unknown mRNA /cds=m(213,872) /gb=BT053012
Os.88427
Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence /cds=p(305,1336) /gb=AK103760
Pba.11075
WS02546.C21.1_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_E08 3', mRNA sequence /clone=WS02546_E08 /clone_end=3' /gb=DT490902
Pth.11075
WS02546.C21.1_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_E08 3', mRNA sequence /clone=WS02546_E08 /clone_end=3' /gb=DT490902
Ptp.6027
R027F07 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU885194
Vvi.5969
VV_PEa015b03.b1 Vitis vinifera cv. perlette LibA Vitis vinifera cDNA, mRNA sequence /gb=EV229500

Domain Architecture

zf-C2H2 PF00096 681001
DomainStartEndBit scoreE-value
zf-C2H282106260.00014
zf-C2H211113528.32.8e-05
zf-C2H214116532.91.2e-06
zf-C2H217119527.83.9e-05
zf-C2H223425924.30.00044

Sequences