Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 706432

Identification

Species:
Populus trichocarpa
Gene model
706432
Description
estExt_Genewise1_v1.C_LG_I1843
Family
C3H
3D structure (top 5)
2D9N 2RHK 2E5S 2RPP 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

907942 Score: 1

Chlorella sp. NC64A

18295 Score: 1

Chlamydomonas reinhardtii

105687 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.921

Ostreococcus tauri

31899 Score: 1

Physcomitrella patens

139138 Score: 1

Sorghum bicolor

4770553 Score: 1

Selaginella moellendorffii

110501 Score: 1

Zea mays

GRMZM2G098715_P01 Score: 1

Expression data

Expressed Sequence Tags

At.28383
Arabidopsis thaliana zinc finger (CCCH-type/C3HC4-type RING finger) family protein (AT3G08505) mRNA, complete cds /cds=p(87,1058) /gb=NM_202526
At.71511
AYBGF12TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG499496
Hv.5250
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence /gb=AK248188
Os.26343
Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence /cds=p(224,1330) /gb=AK120250
Pba.8620
WS02524.BR_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J20 5', mRNA sequence /clone=WS02524_J20 /clone_end=5' /gb=DT479048
Ppa.21711
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_139138) mRNA, partial cds /cds=p(1,975) /gb=XM_001772688
Pth.17392
Populus trichocarpa clone PX0011_J15 unknown mRNA /cds=p(416,745) /gb=EF144239
Pth.8620
WS02524.BR_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_J20 5', mRNA sequence /clone=WS02524_J20 /clone_end=5' /gb=DT479048
Ptp.11894
UK122TH11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU826635
Vvi.12304
C2B01083 Buds/little clusters (VvC2) Vitis vinifera cDNA clone C2B01083, mRNA sequence /clone=C2B01083 /gb=EE063910

Domain Architecture

zf-CCCH PF00642 706432
DomainStartEndBit scoreE-value
zf-CCCH22721.80.0018
zf-CCCH305530.65.9e-06
zf-CCCH9912423.70.00068
zf-C3HC416722430.56e-06
zf-CCCH2552824.70.33

Sequences