Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 708413

Identification

Species:
Populus trichocarpa
Gene model
708413
Description
estExt_Genewise1_v1.C_LG_I6844
Family
SET
3D structure (top 5)
2F69 2PB7 1H3I 2R3A 1ML9
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.11687
Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) (SUVH3) mRNA, complete cds /cds=p(212,2221) /gb=NM_105968
At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Hv.2567
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf52h10, mRNA sequence /gb=AK249824
Mtr.13736
EST648070 KV3 Medicago truncatula cDNA clone KV3-49K23, mRNA sequence /clone=KV3-49K23 /gb=CB891101
Mtr.22322
EST5313951 GESD Medicago truncatula cDNA clone pGESD17G14 5' end, mRNA sequence /clone=pGESD17G14 /clone_end=5' /gb=BI312201
Os.11922
Oryza sativa Japonica Group cDNA clone:J023004N15, full insert sequence /cds=p(280,2298) /gb=AK069035
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.35901
Oryza sativa Japonica Group cDNA clone:J013002H03, full insert sequence /gb=AK065227
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Pba.7630
WS02529.BR_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_C23 5', mRNA sequence /clone=WS02529_C23 /clone_end=5' /gb=DT480533
Pth.7630
WS02529.BR_C23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02529_C23 5', mRNA sequence /clone=WS02529_C23 /clone_end=5' /gb=DT480533
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

YDG_SRA PF02182 708413
DomainStartEndBit scoreE-value
YDG_SRA44200240.92.8e-69
Pre-SET227327150.45e-42
SET3294851821.5e-51

Sequences