Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 70912

Identification

Species:
Coccomyxa sp. C-169
Gene model
70912
Description
fgeneshCV_pg.C_scaffold_2000049
Family
MYB-related
3D structure (top 5)
1IRZ 2YUM 2ELK 2CU7 2IW5
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487691 Score: 1

Arabidopsis thaliana

AT5G08520.1 Score: 1

Micromonas pusilla CCMP1545

21479 Score: 1

Micromonas sp. RCC299

105391 Score: 1

Ostreococcus lucimarinus

8087 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g04930.1 Score: 1

Ostreococcus tauri

23487 Score: 1

Physcomitrella patens

26829 Score: 1

Populus trichocarpa

218006 Score: 1

Sorghum bicolor

5054036 Score: 1

Selaginella moellendorffii

47768 Score: 1

Vitis vinifera

GSVIVP00017631001 Score: 1

Zea mays

GRMZM2G149958_P01 Score: 1
GRMZM2G157060_P01 Score: 1
GRMZM2G002238_P01 Score: 0.979
GRMZM2G068592_P01 Score: 0.979

Expression data

Expressed Sequence Tags

At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110

Domain Architecture

Myb_DNA-binding PF00249 70912
DomainStartEndBit scoreE-value
Myb_DNA-binding7111031.43.7e-06

Sequences