Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 716932

Identification

Species:
Populus trichocarpa
Gene model
716932
Description
estExt_Genewise1_v1.C_LG_VI0524
Family
C3H
3D structure (top 5)
3C5R 2PNN 1MYO 3D9H 1WDY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
At.5281
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12850) mRNA, complete cds /cds=p(261,2381) /gb=NM_121288
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.4296
EST510150 HOGA Medicago truncatula cDNA clone pHOGA-23E11 5' end, mRNA sequence /clone=pHOGA-23E11 /clone_end=5' /gb=BG648531
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Pba.2984
WS01121.BR_A14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_A14 5', mRNA sequence /clone=WS01121_A14 /clone_end=5' /gb=DT495629
Pth.14436
WS0232.B21_D14 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_D14 3', mRNA sequence /clone=WS0232_D14 /clone_end=3' /gb=CV239381
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5260
WIN025.TB24.1_L08 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_L08 3', mRNA sequence /clone=WIN025_L08 /clone_end=3' /gb=EC924525
Vvi.5592
VV_PEd0013h04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240679

Domain Architecture

Ank PF00023 716932
DomainStartEndBit scoreE-value
Ank43717.90.037
Ank397432.71.3e-06
zf-CCCH21924426.40.00011

Sequences