Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 7275

Identification

Species:
Physcomitrella patens
Gene model
7275
Description
gw1.224.39.1
Family
HB
3D structure (top 5)
1NK2 2CUF 2DMS 2R5Y 2DA6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

912822 Score: 1

Physcomitrella patens

7235 Score: 1
7275 Score: 1

Arabidopsis thaliana

AT1G20700.1 Score: 1
AT4G35550.1 Score: 1

Carica papaya

evm.TU.supercontig_6.359 Score: 1

Micromonas pusilla CCMP1545

48125 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g60270.1 Score: 1
LOC_Os01g60270.2 Score: 1

Ostreococcus tauri

36163 Score: 1

Physcomitrella patens

7235 Score: 1
7275 Score: 1

Populus trichocarpa

815956 Score: 1

Sorghum bicolor

5036832 Score: 1

Selaginella moellendorffii

4561 Score: 1

Vitis vinifera

GSVIVP00002895001 Score: 1

Zea mays

GRMZM2G038252_P02 Score: 1
GRMZM2G069274_P01 Score: 1
GRMZM2G038252_P01 Score: 0.912
GRMZM2G069274_P02 Score: 0.912

Expression data

Expressed Sequence Tags

At.2408
Arabidopsis thaliana HB-4/WOX13 (WUSCHEL-RELATED HOMEOBOX 13); DNA binding / transcription factor (HB-4/WOX13) mRNA, complete cds /cds=p(140,946) /gb=NM_119720
Mtr.10477
EST402719 KV1 Medicago truncatula cDNA clone pKV1-2J20, mRNA sequence /clone=pKV1-2J20 /gb=BE202697
Mtr.4297
Medicago truncatula clone MTYFD_FE_FF_FG1G-O-14 unknown mRNA /cds=p(183,977) /gb=BT052569
Os.24893
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244H01, full insert sequence /gb=CT829377
Ptp.135
Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1 /cds=p(137,790) /gb=AJ010810
Ptp.9520
Populus tremula X Populus tremuloides mRNA for Homeodomain protein HB2, partial /cds=p(1,787) /gb=AJ010811
Vvi.4480
S1G01859 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G01859, mRNA sequence /clone=S1G01859 /gb=EE076126

Domain Architecture

Homeobox PF00046 7275
DomainStartEndBit scoreE-value
Homeobox6112270.65e-18

Sequences