Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 730802

Identification

Species:
Populus trichocarpa
Gene model
730802
Description
estExt_Genewise1_v1.C_LG_XIV0633
Family
C2H2
3D structure (top 5)
1UBD 2JP9 1A1H 2EE8 2CSH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472978 Score: 1

Arabidopsis thaliana

AT1G27730.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g39400.1 Score: 1

Physcomitrella patens

120702 Score: 1

Vitis vinifera

GSVIVP00014947001 Score: 1

Expression data

Expressed Sequence Tags

At.24624
A.thaliana mRNA for salt-tolerance zinc finger protein /cds=p(55,738) /gb=X95573
Mtr.10789
Medicago truncatula clone MTYF5_F6_F7_F81G-D-8 unknown mRNA /cds=p(53,751) /gb=BT051775
Mtr.9165
Medicago truncatula clone MTYF5_F6_F7_F81G-D-5 unknown mRNA /cds=p(215,925) /gb=BT051747
Pba.1818
WS02545.B21_E23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02545_E23 3', mRNA sequence /clone=WS02545_E23 /clone_end=3' /gb=DT490563
Pth.1818
WS0257.B21_K16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_K16 3', mRNA sequence /clone=WS0257_K16 /clone_end=3' /gb=CV245525
Ptp.5332
R039G03 Populus root cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU886051
Vvi.11706
VVI155C12_607644 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI155C12 5, mRNA sequence /clone=VVI155C12 /clone_end=5' /gb=DV217991
Vvi.23739
VVL114F11_694242 CabSau Berry Postveraison Mixed Stages 36-38 (Brix > 15) under water deficit stress Vitis vinifera cDNA clone VVL114F11 5, mRNA sequence /clone=VVL114F11 /clone_end=5' /gb=DT036308
Vvi.8755
WIN0817.C21_P14 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0817_P14 3', mRNA sequence /clone=WIN0817_P14 /clone_end=3' /gb=EC965381

Domain Architecture

zf-C2H2 PF00096 730802
DomainStartEndBit scoreE-value
zf-C2H28110319.70.011

Sequences