Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 732336

Identification

Species:
Populus trichocarpa
Gene model
732336
Description
estExt_Genewise1_v1.C_LG_XIV3517
Family
C3H
3D structure (top 5)
1M9O 2CQE 2E5S 2RHK 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_346.1 Score: 1

Vitis vinifera

GSVIVP00025958001 Score: 1

Expression data

Expressed Sequence Tags

Mtr.9480
EST484528 GVN Medicago truncatula cDNA clone pGVN-70P3 5' end, mRNA sequence /clone=pGVN-70P3 /clone_end=5' /gb=BG582782
Pba.10256
WS02533.B21_F09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_F09 3', mRNA sequence /clone=WS02533_F09 /clone_end=3' /gb=DT487304
Pth.10256
WS02533.B21_F09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_F09 3', mRNA sequence /clone=WS02533_F09 /clone_end=3' /gb=DT487304
Ptp.10160
G092P12.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G092P12 3', mRNA sequence /clone=G092P12 /clone_end=3' /gb=CK092695
Ptp.1654
T038E10 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU832817
Vvi.13491
CAB10004_IVa_Fa_H07 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10004_IVa_Fa_H07 5', mRNA sequence /clone=CAB10004_IVa_Fa_H07 /clone_end=5' /gb=CB970976
Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 732336
DomainStartEndBit scoreE-value
zf-CCCH507642.31.7e-09
zf-CCCH9211839.21.5e-08
zf-CCCH13716340.17.7e-09
zf-CCCH28731343.57.4e-10
zf-CCCH33335939.41.3e-08

Sequences