Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 732453

Identification

Species:
Populus trichocarpa
Gene model
732453
Description
estExt_Genewise1_v1.C_LG_XIV3724
Family
C3H
3D structure (top 5)
2E5G 3D2W 1WF0 2JVO 2JWN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480130 Score: 1

Arabidopsis thaliana

AT2G05160.1 Score: 1

Carica papaya

evm.TU.supercontig_211.13 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1

Physcomitrella patens

137259 Score: 1

Vitis vinifera

GSVIVP00029141001 Score: 1

Zea mays

GRMZM2G148090_P01 Score: 1
GRMZM2G148090_P02 Score: 1

Expression data

Expressed Sequence Tags

At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
At.53909
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G52980) mRNA, complete cds /cds=p(1,1146) /gb=NM_115158
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516

Domain Architecture

zf-CCCH PF00642 732453
DomainStartEndBit scoreE-value
zf-CCCH16719220.40.0027

Sequences