Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 733631

Identification

Species:
Populus trichocarpa
Gene model
733631
Description
estExt_Genewise1_v1.C_LG_XV2139
Family
CCAAT
3D structure (top 5)
1N1J 2BYK 1JFI 1F1E 1KU5
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485217 Score: 1

Arabidopsis thaliana

AT3G48590.1 Score: 1

Carica papaya

evm.TU.supercontig_13.98 Score: 1

Populus trichocarpa

423222 Score: 1
733631 Score: 0.903

Ostreococcus lucimarinus

7962 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g14669.1 Score: 1
LOC_Os03g14669.2 Score: 1

Expression data

Expressed Sequence Tags

At.23009
Arabidopsis thaliana HAP5A (Heme activator protein (yeast) homolog 5A); DNA binding / transcription factor (HAP5A) mRNA, complete cds /cds=p(45,749) /gb=NM_114718
At.28997
Arabidopsis thaliana CCAAT-box binding transcription factor Hap5a, putative (AT5G63470) mRNA, complete cds /cds=p(15,767) /gb=NM_125742
At.69059
AYAVU59TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG462564
Mtr.14852
EST633459 KVKC Medicago truncatula cDNA, mRNA sequence /gb=BQ750723
Mtr.15152
EST640470 MTUS Medicago truncatula cDNA clone MTUS-57G7, mRNA sequence /clone=MTUS-57G7 /gb=CA922752
Os.10876
Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence /cds=p(191,970) /gb=AK243429
Os.12037
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017G01, full insert sequence /gb=CT836539
Os.96905
Oryza sativa (japonica cultivar-group) Os03g0251300 (Os03g0251300) mRNA, complete cds /cds=p(1,921) /gb=NM_001056106
Pba.10716
WS01226.BR.1_F03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_F03 5', mRNA sequence /clone=WS01226_F03 /clone_end=5' /gb=DT472391
Pba.1266
WS02538.B21_P11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_P11 3', mRNA sequence /clone=WS02538_P11 /clone_end=3' /gb=DT489341
Pba.172
WS01223.B21_A03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_A03 3', mRNA sequence /clone=WS01223_A03 /clone_end=3' /gb=CV236141
Pba.8668
WS02524.B21_D03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_D03 3', mRNA sequence /clone=WS02524_D03 /clone_end=3' /gb=DT484009
Pth.1266
WS02538.B21_P11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_P11 3', mRNA sequence /clone=WS02538_P11 /clone_end=3' /gb=DT489341
Pth.172
Populus trichocarpa clone WS01226_F03 unknown mRNA /cds=p(56,763) /gb=EF147023
Pth.17388
WS01223.B21_A03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_A03 3', mRNA sequence /clone=WS01223_A03 /clone_end=3' /gb=CV236141
Pth.8668
WS02524.B21_D03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_D03 3', mRNA sequence /clone=WS02524_D03 /clone_end=3' /gb=DT484009
Ptp.11048
A069P24.5pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A069P24 5', mRNA sequence /clone=A069P24 /clone_end=5' /gb=CK099470
Ptp.2559
G069P33.3pR Populus tension wood cDNA library Populus tremula x Populus tremuloides cDNA clone G069P33 3', mRNA sequence /clone=G069P33 /clone_end=3' /gb=CK092185
Vvi.1103
WIN063.C21_G22 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN063_G22 3', mRNA sequence /clone=WIN063_G22 /clone_end=3' /gb=EC957694
Vvi.12631
WIN055.C21_J16 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN055_J16 3', mRNA sequence /clone=WIN055_J16 /clone_end=3' /gb=EC938104

Domain Architecture

Histone PF00125 733631
DomainStartEndBit scoreE-value
Histone6313646.11.2e-10
CBFD_NFYB_HMF6913387.34.7e-23
NF-YC72145172.41.9e-51

Sequences

protein sequence
transcript sequence