Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 751997

Identification

Species:
Populus trichocarpa
Gene model
751997
Description
fgenesh4_pg.C_LG_I001600
Family
C3H
3D structure (top 5)
2E5G 1WF0 3D2W 2JVO 2JWN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

325766 Score: 1

Carica papaya

evm.TU.supercontig_84.23 Score: 1

Expression data

Expressed Sequence Tags

At.32141
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12440) mRNA, complete cds /cds=p(488,2146) /gb=NM_121282
At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595
Pth.16149
F127P56.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F127P56 3', mRNA sequence /clone=F127P56 /clone_end=3' /gb=CK091812
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516
Vvi.13513
CAB10006_IIIa_Fa_F02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_F02 5', mRNA sequence /clone=CAB10006_IIIa_Fa_F02 /clone_end=5' /gb=CB971846

Domain Architecture

zf-CCCH PF00642 751997
DomainStartEndBit scoreE-value
zf-CCCH23726223.80.00065
RRM_137644421.90.0014

Sequences