Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 754535

Identification

Species:
Populus trichocarpa
Gene model
754535
Description
fgenesh4_pg.C_LG_II000715
Family
C3H
3D structure (top 5)
2RPP 3D2N 2D9N 3D2Q
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

313049 Score: 1

Expression data

Expressed Sequence Tags

At.41648
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G21570) mRNA, complete cds /cds=p(1,1413) /gb=NM_102006
Hv.29470
RUS113B09r HY Hordeum vulgare subsp. vulgare cDNA clone HY02I16, mRNA sequence /clone=HY02I16 /gb=FD524654
Mtr.21570
MEUAY59TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE351191
Pba.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Pba.6719
WS02537.B21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_O10 3', mRNA sequence /clone=WS02537_O10 /clone_end=3' /gb=DT488953
Pth.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Pth.6719
WS02537.B21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_O10 3', mRNA sequence /clone=WS02537_O10 /clone_end=3' /gb=DT488953
Vvi.5890
WIN025.TB24.1_B18 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_B18 3', mRNA sequence /clone=WIN025_B18 /clone_end=3' /gb=EC924347

Domain Architecture

zf-CCCH PF00642 754535
DomainStartEndBit scoreE-value
zf-CCCH1887191411.10.046
zf-CCCH1942196610.70.052
zf-CCCH1969199410.60.055
zf-CCCH19952017150.014

Sequences